Merge topic 'hdf5-module-bug-fix'

e38216c Remove unnecessary mark_as_advanced from FindHDF5.
93ba19e FindHDF5 ensures good link lines when libraries are duplicated.
0584701 Fix for bug 11752, mixed debug and release libraries.
4e12284 Use HDF5_FOUND to control autoconf and CMake built FindHDF5.
2ba826e Use CMAKE_CURRENT_LIST_DIR to locate FindPackageHandleStandardArgs.
3978f32 Add logic for CMake built HDF5 install.
063ac87 HDF5 high level library is a find COMPONENT now.
34ea179 Modified the FindHDF5.cmake file to locate the Fortran bindings.

Modules/FindHDF5.cmake

@@ -9,10 +9,9 @@
 # The module will optionally accept the COMPONENTS argument.  If no COMPONENTS
 # are specified, then the find module will default to finding only the HDF5 C
 # library.  If one or more COMPONENTS are specified, the module will attempt to
-# find the language bindings for the specified components.  Currently, the only
-# valid components are C and CXX.  The module does not yet support finding the
-# Fortran bindings.  If the COMPONENTS argument is not given, the module will
-# attempt to find only the C bindings.
+# find the language bindings for the specified components.  The only valid
+# components are C, CXX, Fortran, and HL.  If the COMPONENTS argument is not
+# given, the module will attempt to find only the C bindings.
 #
 # On UNIX systems, this module will read the variable HDF5_USE_STATIC_LIBRARIES
 # to determine whether or not to prefer a static link to a dynamic link for HDF5
@@ -33,12 +32,15 @@
 #  HDF5_DEFINITIONS - Required compiler definitions for HDF5
 #  HDF5_C_LIBRARIES - Required libraries for the HDF5 C bindings.
 #  HDF5_CXX_LIBRARIES - Required libraries for the HDF5 C++ bindings
+#  HDF5_Fortran_LIBRARIES - Required libraries for the HDF5 Fortran bindings
+#  HDF5_HL_LIBRARIES - Required libraries for the HDF5 high level API
 #  HDF5_LIBRARIES - Required libraries for all requested bindings
 #  HDF5_FOUND - true if HDF5 was found on the system
 #  HDF5_LIBRARY_DIRS - the full set of library directories
 #  HDF5_IS_PARALLEL - Whether or not HDF5 was found with parallel IO support
 #  HDF5_C_COMPILER_EXECUTABLE - the path to the HDF5 C wrapper compiler
 #  HDF5_CXX_COMPILER_EXECUTABLE - the path to the HDF5 C++ wrapper compiler
+#  HDF5_Fortran_COMPILER_EXECUTABLE - the path to the HDF5 Fortran wrapper compiler
 #  HDF5_DIFF_EXECUTABLE - the path to the HDF5 dataset comparison tool
 
 #=============================================================================
@@ -63,8 +65,26 @@ include(${CMAKE_CURRENT_LIST_DIR}/FindPackageHandleStandardArgs.cmake)
 set( HDF5_VALID_COMPONENTS 
     C
     CXX
+    Fortran
+    HL
 )
 
+# Validate the list of find components.
+if( NOT HDF5_FIND_COMPONENTS )
+    set( HDF5_LANGUAGE_BINDINGS "C" )
+else()
+    # add the extra specified components, ensuring that they are valid.
+    foreach( component ${HDF5_FIND_COMPONENTS} )
+        list( FIND HDF5_VALID_COMPONENTS ${component} component_location )
+        if( ${component_location} EQUAL -1 )
+            message( FATAL_ERROR
+                "\"${component}\" is not a valid HDF5 component." )
+        else()
+            list( APPEND HDF5_LANGUAGE_BINDINGS ${component} )
+        endif()
+    endforeach()
+endif()
+
 # try to find the HDF5 wrapper compilers
 find_program( HDF5_C_COMPILER_EXECUTABLE
     NAMES h5cc h5pcc
@@ -80,6 +100,13 @@ find_program( HDF5_CXX_COMPILER_EXECUTABLE
     DOC "HDF5 C++ Wrapper compiler.  Used only to detect HDF5 compile flags." )
 mark_as_advanced( HDF5_CXX_COMPILER_EXECUTABLE )
 
+find_program( HDF5_Fortran_COMPILER_EXECUTABLE
+    NAMES h5fc h5pfc
+    HINTS ENV HDF5_ROOT
+    PATH_SUFFIXES bin Bin
+    DOC "HDF5 Fortran Wrapper compiler.  Used only to detect HDF5 compile flags." )
+mark_as_advanced( HDF5_Fortran_COMPILER_EXECUTABLE )
+
 find_program( HDF5_DIFF_EXECUTABLE 
     NAMES h5diff
     HINTS ENV HDF5_ROOT
@@ -152,31 +179,39 @@ macro( _HDF5_parse_compile_line
     endforeach()
 endmacro()
 
-if( HDF5_INCLUDE_DIRS AND HDF5_LIBRARIES )
-    # Do nothing: we already have HDF5_INCLUDE_PATH and HDF5_LIBRARIES in the
-    # cache, it would be a shame to override them
-else()
-    _HDF5_invoke_compiler( C HDF5_C_COMPILE_LINE HDF5_C_RETURN_VALUE )
-    _HDF5_invoke_compiler( CXX HDF5_CXX_COMPILE_LINE HDF5_CXX_RETURN_VALUE )
-
-    if( NOT HDF5_FIND_COMPONENTS )
-        set( HDF5_LANGUAGE_BINDINGS "C" )
-    else()
-        # add the extra specified components, ensuring that they are valid.
-        foreach( component ${HDF5_FIND_COMPONENTS} )
-            list( FIND HDF5_VALID_COMPONENTS ${component} component_location )
-            if( ${component_location} EQUAL -1 )
-                message( FATAL_ERROR  
-                    "\"${component}\" is not a valid HDF5 component." )
-            else()
-                list( APPEND HDF5_LANGUAGE_BINDINGS ${component} )
+# Try to find HDF5 using an installed hdf5-config.cmake
+if( NOT HDF5_FOUND )
+    find_package( HDF5 QUIET NO_MODULE )
+    if( HDF5_FOUND )
+        set( HDF5_INCLUDE_DIRS ${HDF5_INCLUDE_DIR} )
+        set( HDF5_LIBRARIES )
+        set( HDF5_C_TARGET hdf5 )
+        set( HDF5_CXX_TARGET hdf5_cpp )
+        set( HDF5_HL_TARGET hdf5_hl )
+        set( HDF5_Fortran_TARGET hdf5_fortran )
+        foreach( _component ${HDF5_LANGUAGE_BINDINGS} )
+            list( FIND HDF5_VALID_COMPONENTS ${_component} _component_location )
+            get_target_property( _comp_location ${HDF5_${_component}_TARGET} LOCATION )
+            if( _comp_location )
+                set( HDF5_${_component}_LIBRARY ${_comp_location} CACHE PATH
+                    "HDF5 ${_component} library" )
+                mark_as_advanced( HDF5_${_component}_LIBRARY )
+                list( APPEND HDF5_LIBRARIES ${HDF5_${_component}_LIBRARY} )
             endif()
         endforeach()
     endif()
-    
+endif()
+
+if( NOT HDF5_FOUND )
+    _HDF5_invoke_compiler( C HDF5_C_COMPILE_LINE HDF5_C_RETURN_VALUE )
+    _HDF5_invoke_compiler( CXX HDF5_CXX_COMPILE_LINE HDF5_CXX_RETURN_VALUE )
+    _HDF5_invoke_compiler( Fortran HDF5_Fortran_COMPILE_LINE HDF5_Fortran_RETURN_VALUE )
+
     # seed the initial lists of libraries to find with items we know we need
-    set( HDF5_C_LIBRARY_NAMES_INIT hdf5_hl hdf5 )
+    set( HDF5_C_LIBRARY_NAMES_INIT hdf5 )
+    set( HDF5_HL_LIBRARY_NAMES_INIT hdf5_hl ${HDF5_C_LIBRARY_NAMES_INIT} )
     set( HDF5_CXX_LIBRARY_NAMES_INIT hdf5_cpp ${HDF5_C_LIBRARY_NAMES_INIT} )
+    set( HDF5_Fortran_LIBRARY_NAMES_INIT hdf5_fortran ${HDF5_C_LIBRARY_NAMES_INIT} )
     
     foreach( LANGUAGE ${HDF5_LANGUAGE_BINDINGS} )
         if( HDF5_${LANGUAGE}_COMPILE_LINE )
@@ -198,7 +233,13 @@ else()
         list( APPEND HDF5_DEFINITIONS ${HDF5_${LANGUAGE}_DEFINITIONS} )
     
         # find the HDF5 include directories
-        find_path( HDF5_${LANGUAGE}_INCLUDE_DIR hdf5.h
+        if(${LANGUAGE} STREQUAL "Fortran")
+            set(HDF5_INCLUDE_FILENAME hdf5.mod)
+        else()
+            set(HDF5_INCLUDE_FILENAME hdf5.h)
+        endif()
+
+        find_path( HDF5_${LANGUAGE}_INCLUDE_DIR ${HDF5_INCLUDE_FILENAME}
             HINTS
                 ${HDF5_${LANGUAGE}_INCLUDE_FLAGS}
                 ENV
@@ -266,26 +307,41 @@ else()
 
     # We may have picked up some duplicates in various lists during the above
     # process for the language bindings (both the C and C++ bindings depend on
-    # libz for example).  Remove the duplicates.
+    # libz for example).  Remove the duplicates. It appears that the default
+    # CMake behavior is to remove duplicates from the end of a list. However,
+    # for link lines, this is incorrect since unresolved symbols are searched
+    # for down the link line. Therefore, we reverse the list, remove the
+    # duplicates, and then reverse it again to get the duplicates removed from
+    # the beginning.
+    macro( _remove_duplicates_from_beginning _list_name )
+        list( REVERSE ${_list_name} )
+        list( REMOVE_DUPLICATES ${_list_name} )
+        list( REVERSE ${_list_name} )
+    endmacro()
+
     if( HDF5_INCLUDE_DIRS )
-        list( REMOVE_DUPLICATES HDF5_INCLUDE_DIRS )
+        _remove_duplicates_from_beginning( HDF5_INCLUDE_DIRS )
     endif()
     if( HDF5_LIBRARIES_DEBUG )
-        list( REMOVE_DUPLICATES HDF5_LIBRARIES_DEBUG )
+        _remove_duplicates_from_beginning( HDF5_LIBRARIES_DEBUG )
     endif()
     if( HDF5_LIBRARIES_RELEASE )
-        list( REMOVE_DUPLICATES HDF5_LIBRARIES_RELEASE )
+        _remove_duplicates_from_beginning( HDF5_LIBRARIES_RELEASE )
     endif()
     if( HDF5_LIBRARY_DIRS )
-        list( REMOVE_DUPLICATES HDF5_LIBRARY_DIRS )
+        _remove_duplicates_from_beginning( HDF5_LIBRARY_DIRS )
     endif()
 
     # Construct the complete list of HDF5 libraries with debug and optimized
     # variants when the generator supports them.
     if( CMAKE_CONFIGURATION_TYPES OR CMAKE_BUILD_TYPE )
-        set( HDF5_LIBRARIES
-            debug ${HDF5_LIBRARIES_DEBUG}
-            optimized ${HDF5_LIBRARIES_RELEASE} )
+        set( HDF5_LIBRARIES )
+        foreach( _lib ${HDF5_LIBRARIES_DEBUG} )
+            list( APPEND HDF5_LIBRARIES debug ${_lib} )
+        endforeach()
+        foreach( _lib ${HDF5_LIBRARIES_RELEASE} )
+            list( APPEND HDF5_LIBRARIES optimized ${_lib} )
+        endforeach()
     else()
         set( HDF5_LIBRARIES ${HDF5_LIBRARIES_RELEASE} )
     endif()
@@ -307,6 +363,12 @@ else()
         "HDF5 library compiled with parallel IO support" )
     mark_as_advanced( HDF5_IS_PARALLEL )
 
+    # For backwards compatibility we set HDF5_INCLUDE_DIR to the value of
+    # HDF5_INCLUDE_DIRS
+    if( HDF5_INCLUDE_DIRS )
+        set( HDF5_INCLUDE_DIR "${HDF5_INCLUDE_DIRS}" )
+    endif()
+
 endif()
 
 find_package_handle_standard_args( HDF5 DEFAULT_MSG 
@@ -314,15 +376,3 @@ find_package_handle_standard_args( HDF5 DEFAULT_MSG
     HDF5_INCLUDE_DIRS
 )
 
-mark_as_advanced( 
-    HDF5_INCLUDE_DIRS 
-    HDF5_LIBRARIES 
-    HDF5_DEFINTIONS
-    HDF5_LIBRARY_DIRS
-    HDF5_C_COMPILER_EXECUTABLE
-    HDF5_CXX_COMPILER_EXECUTABLE )
-
-# For backwards compatibility we set HDF5_INCLUDE_DIR to the value of
-# HDF5_INCLUDE_DIRS
-set( HDF5_INCLUDE_DIR "${HDF5_INCLUDE_DIRS}" )
-