enhance(db): use wasm-based sqlite storage

deps/persist-db/package.json

@@ -1,18 +0,0 @@
-{
-  "name": "persist-db",
-  "version": "1.0.0",
-  "main": "./src/index.js",
-  "private": true,
-  "license": "AGPL-3.0",
-  "scripts": {
-    "build": "webpack"
-  },
-  "dependencies": {
-    "comlink": "^4.4.1",
-    "wa-sqlite": "../../vendor/wa-sqlite"
-  },
-  "devDependencies": {
-    "webpack": "^5.88.2",
-    "webpack-cli": "^5.1.4"
-  }
-}

deps/persist-db/src/index.js

@@ -1,371 +0,0 @@
-import SQLiteModuleFactory from 'wa-sqlite/dist/wa-sqlite-async.mjs';
-import * as SQLite from 'wa-sqlite/src/sqlite-api.js';
-// import { OriginPrivateFileSystemVFS } from 'wa-sqlite/src/examples/OriginPrivateFileSystemVFS.js';
-
-import { IDBBatchAtomicVFS } from 'wa-sqlite/src/examples/IDBBatchAtomicVFS.js';
-import * as Comlink from 'comlink';
-
-
-let sqlite3;
-let dbMap = {};
-const idbName = "logseq-VFS";
-
-class AsyncLock {
-    constructor() {
-        this.disable = (_) => { }
-        this.promise = Promise.resolve()
-    }
-    enable() {
-        this.promise = new Promise(resolve => this.disable = resolve)
-    }
-}
-
-const lock = new AsyncLock()
-
-// uuid, type, page_uuid, page_journal_day, name, content,datoms, created_at, updated_at
-const rowToBlock = (row) => {
-    return {
-        uuid: row[0],
-        type: row[1],
-        page_uuid: row[2],
-        page_journal_day: row[3],
-        name: row[4],
-        content: row[5],
-        datoms: row[6],
-        created_at: row[7],
-        updated_at: row[8]
-    }
-}
-
-const SQLiteDB = {
-    inc() {
-        return 233;
-    },
-    async listDB() {
-        return new Promise((resolve, reject) => {
-            const request = indexedDB.open(idbName);
-            request.onerror = reject;
-            request.onsuccess = (ev) => {
-                const db = ev.target.result;
-                const transaction = db.transaction(["blocks"], "readonly");
-                const objectStore = transaction.objectStore("blocks");
-                const request = objectStore.getAllKeys();
-                request.onsuccess = () => {
-                    db.close();
-                    const dbNames = [];
-                    for (const key of request.result) {
-                        if (dbNames.findIndex(dbName => dbName === key[0]) === -1) {
-                            dbNames.push(key[0]);
-                        }
-                    }
-                    resolve(dbNames.map(dbName => dbName.replace(/^\//, "")));
-                };
-                request.onerror = reject;
-            };
-        });
-    },
-    async unsafeUnlinkDB(dbName) {
-        const dbKey = "/" + dbName;
-        console.log("[worker] deleting", dbName);
-        const db = dbMap[dbName];
-        if (db) {
-            await sqlite3.close_v2(db);
-            delete dbMap[dbName];
-        }
-        return new Promise((resolve, reject) => {
-            const request = indexedDB.open(idbName);
-            request.onerror = reject;
-            request.onsuccess = (ev) => {
-                const db = ev.target.result;
-                const transaction = db.transaction(["blocks"], "readwrite");
-                const objectStore = transaction.objectStore("blocks");
-                const request = objectStore.openCursor();
-                request.onsuccess = (event) => {
-                    const cursor = event.target.result;
-                    if (cursor) {
-                        if (cursor.key[0] === (dbKey)) {
-                            cursor.delete();
-                        }
-                        cursor.continue();
-                    } else {
-                        db.close();
-                        resolve();
-                    }
-                };
-                request.onerror = reject;
-            };
-        });
-    },
-    async init() {
-        console.log("[worker] calling init");
-        if (typeof sqlite3 === "undefined") {
-            const module = await SQLiteModuleFactory();
-            sqlite3 = SQLite.Factory(module);
-            // OPFS is not supported in shared worker
-            // const vfs = new OriginPrivateFileSystemVFS();
-            const vfs = new IDBBatchAtomicVFS("logseq-VFS");
-            await vfs.isReady;
-            sqlite3.vfs_register(vfs, true);
-            console.log("[worker] SQLite vfs init ok")
-        }
-    },
-    // aka. newDB and openDB
-    // :db-new
-    async newDB(dbName) {
-        console.log("[worker] SQLite newDB", dbName);
-        let db = dbMap[dbName];
-        if (db) {
-            return db;
-        }
-        db = await sqlite3.open_v2(dbName ?? 'demo');
-        // create-blocks-table!
-        const str = sqlite3.str_new(db, `CREATE TABLE IF NOT EXISTS blocks (
-            uuid TEXT PRIMARY KEY NOT NULL,
-            type INTEGER NOT NULL,
-            page_uuid TEXT,
-            page_journal_day INTEGER,
-            name TEXT UNIQUE,
-            content TEXT,
-            datoms TEXT,
-            created_at INTEGER NOT NULL,
-            updated_at INTEGER NOT NULL
-            )`);
-        let prepared = await sqlite3.prepare_v2(db, sqlite3.str_value(str));
-        console.log("debug 1 stmt", prepared);
-        const rc = await sqlite3.step(prepared.stmt);
-        sqlite3.str_finish(str);
-        sqlite3.finalize(prepared.stmt);
-        // 101, done
-
-        console.log("debug 2 rc", rc);
-        console.log("[worker] SQLite newDB create table", rc);
-
-        const idxSqlStr = sqlite3.str_new(db, `CREATE INDEX IF NOT EXISTS block_type ON blocks(type)`)
-        prepared = await sqlite3.prepare_v2(db, sqlite3.str_value(idxSqlStr));
-        const idxRc = await sqlite3.step(prepared.stmt);
-        sqlite3.str_finish(idxSqlStr);
-        sqlite3.finalize(prepared.stmt);
-
-        dbMap[dbName] = db;
-        return;
-    },
-
-    async deleteBlocks(dbName, uuids = []) {
-        const db = dbMap[dbName];
-        if (!db) {
-            await this.newDB(dbName);
-        }
-        if (db && uuids.length > 0) {
-            const sql = sqlite3.str_new(db, "DELETE from blocks WHERE uuid IN (");
-            sqlite3.str_appendall(sql, uuids.map(_ => "?").join(","));
-            sqlite3.str_appendall(sql, ")");
-            const prepared = await sqlite3.prepare_v2(db, sqlite3.str_value(sql));
-
-            sqlite3.reset(prepared.stmt);
-            sqlite3.bind_collection(prepared.stmt, uuids);
-
-            const rows = [];
-            while (await sqlite3.step(prepared.stmt) === SQLite.SQLITE_ROW) {
-                const row = sqlite3.row(prepared.stmt);
-                rows.push(row);
-            }
-            sqlite3.str_finish(sql);
-            sqlite3.finalize(prepared.stmt);
-            return rows;
-        }
-    },
-
-    async upsertBlocks(dbName, blocks) {
-        console.log("[worker] inserting blocks ", blocks);
-        let db = dbMap[dbName];
-        if (!db) {
-            await this.newDB(dbName);
-            db = dbMap[dbName];
-        }
-
-        await lock.promise;
-        lock.enable();
-
-        const before = await sqlite3.changes(db);
-
-        let rc;
-        try {
-            rc = await sqlite3.exec(db, "BEGIN"); // todo check rc
-            console.log("begin transaction", rc);
-        } catch (e) {
-            console.error("begin transaction error", e);
-            lock.disable();
-            throw e;
-        }
-
-        const str = sqlite3.str_new(db, `
-            INSERT INTO blocks (uuid, type, page_uuid, page_journal_day, name, content,datoms, created_at, updated_at)
-            VALUES (@uuid, @type, @page_uuid, @page_journal_day, @name, @content, @datoms, @created_at, @updated_at)
-            ON CONFLICT (uuid)
-            DO UPDATE
-                SET (type, page_uuid, page_journal_day, name, content, datoms, created_at, updated_at)
-                = (@type, @page_uuid, @page_journal_day, @name, @content, @datoms, @created_at, @updated_at)
-        `);
-        const prepared = await sqlite3.prepare_v2(db, sqlite3.str_value(str));
-        for (const block of blocks) {
-            console.log("upsert block", block);
-            await sqlite3.reset(prepared.stmt);
-            sqlite3.bind_collection(prepared.stmt, block);
-            try {
-                rc = await sqlite3.step(prepared.stmt);
-                console.log("upsert block step rc", rc);
-            } catch (e) {
-                console.error("upsert block error", e);
-
-                await sqlite3.exec(db, "ROLLBACK");
-                lock.disable();
-            }
-        }
-
-        rc = await sqlite3.exec(db, "COMMIT");
-        console.log("commit transaction", rc);
-
-        const after = await sqlite3.changes(db);
-        console.log(`[worker] SQLite upsertBlocks: ${before} -> ${after}`);
-
-        lock.disable();
-        return after - before;
-    },
-
-    async fetchAllPages(dbName) {
-        console.log("fetch all pages");
-        let db = dbMap[dbName];
-        if (!db) {
-            await this.newDB(dbName);
-            db = dbMap[dbName];
-        }
-        const sql = sqlite3.str_new(db, "SELECT * FROM blocks WHERE type = 2");
-        const prepared = await sqlite3.prepare_v2(db, sqlite3.str_value(sql));
-        const allPages = [];
-        while (await sqlite3.step(prepared.stmt) === SQLite.SQLITE_ROW) {
-            const row = sqlite3.row(prepared.stmt);
-            allPages.push(row);
-        }
-        sqlite3.str_finish(sql);
-        sqlite3.finalize(prepared.stmt);
-        console.log("all pages", allPages);
-        // uuid, type, page_uuid, page_journal_day, name, content,datoms, created_at, updated_at
-        return allPages.map(rowToBlock);
-    },
-
-    async fetchAllBlocks(dbName) {
-        console.log("fetch all blocks");
-        let db = dbMap[dbName];
-        if (!db) {
-            await this.newDB(dbName);
-            db = dbMap[dbName];
-        }
-        const sql = sqlite3.str_new(db, "SELECT uuid, page_uuid FROM blocks WHERE type = 1");
-        const prepared = await sqlite3.prepare_v2(db, sqlite3.str_value(sql));
-        const rows = [];
-        while (await sqlite3.step(prepared.stmt) === SQLite.SQLITE_ROW) {
-            const row = sqlite3.row(prepared.stmt);
-            rows.push(row);
-        }
-        sqlite3.str_finish(sql);
-        sqlite3.finalize(prepared.stmt);
-        console.log("all blocks", rows);
-
-        return rows.map(row => {
-            return { uuid: row[0], page_uuid: row[1] }
-        });
-    },
-
-    async fetchRecentJournalBlocks(dbName) {
-        let db = dbMap[dbName];
-        if (!db) {
-            await this.newDB(dbName);
-            db = dbMap[dbName];
-        }
-        let sql = sqlite3.str_new(db, "SELECT uuid FROM blocks WHERE type = 2 ORDER BY page_journal_day DESC LIMIT 3");
-        let prepared = await sqlite3.prepare_v2(db, sqlite3.str_value(sql));
-        const rows = [];
-        while (await sqlite3.step(prepared.stmt) === SQLite.SQLITE_ROW) {
-            const row = sqlite3.row(prepared.stmt);
-            rows.push(row);
-        }
-        sqlite3.str_finish(sql);
-        sqlite3.finalize(prepared.stmt);
-        const recentJournalIds = rows.map(row => row[0]);
-        console.log("recent journal blocks", rows, recentJournalIds);
-
-        if (recentJournalIds.length === 0) {
-            return [];
-        }
-
-        sql = "SELECT * FROM blocks WHERE type = 1 AND page_uuid IN (";
-        // join recentJournalIds
-        sql += recentJournalIds.map(_ => "?").join(",");
-        sql += ")";
-        sql = sqlite3.str_new(db, sql);
-        prepared = await sqlite3.prepare_v2(db, sqlite3.str_value(sql));
-        sqlite3.reset(prepared.stmt);
-        sqlite3.bind_collection(prepared.stmt, recentJournalIds);
-
-        const blocks = [];
-        while (await sqlite3.step(prepared.stmt) === SQLite.SQLITE_ROW) {
-            const row = sqlite3.row(prepared.stmt);
-            blocks.push(row);
-        }
-        sqlite3.str_finish(sql);
-        sqlite3.finalize(prepared.stmt);
-        console.log("recent journal blocks", blocks);
-
-        return blocks.map(rowToBlock);
-    },
-
-    async fetchInitData(dbName) {
-        let db = dbMap[dbName];
-        if (!db) {
-            await this.newDB(dbName);
-            db = dbMap[dbName];
-        }
-        // all required types
-        const sql = sqlite3.str_new(db, "SELECT * FROM blocks WHERE type IN (3, 4, 5, 6)");
-        const prepared = await sqlite3.prepare_v2(db, sqlite3.str_value(sql));
-        const rows = [];
-        while (await sqlite3.step(prepared.stmt) === SQLite.SQLITE_ROW) {
-            const row = sqlite3.row(prepared.stmt);
-            rows.push(row);
-        }
-        sqlite3.str_finish(sql);
-        sqlite3.finalize(prepared.stmt);
-        console.log("all required types", rows);
-        return rows.map(rowToBlock);
-    },
-
-    async fetchBlocksExcluding(dbName, excludeUUIDs) {
-        let db = dbMap[dbName];
-        if (!db) {
-            await this.newDB(dbName);
-            db = dbMap[dbName];
-        }
-        const sql = sqlite3.str_new(db, "SELECT * FROM blocks WHERE TYPE = 1 AND uuid NOT IN (");
-        sqlite3.str_appendall(sql, excludeUUIDs.map(_ => "?").join(","));
-        sqlite3.str_appendall(sql, ")");
-        const prepared = await sqlite3.prepare_v2(db, sqlite3.str_value(sql));
-        sqlite3.reset(prepared.stmt);
-        sqlite3.bind_collection(prepared.stmt, excludeUUIDs);
-
-        const blocks = [];
-        while (await sqlite3.step(prepared.stmt) === SQLite.SQLITE_ROW) {
-            const row = sqlite3.row(prepared.stmt);
-            blocks.push(row);
-        }
-        sqlite3.str_finish(sql);
-        sqlite3.finalize(prepared.stmt);
-        console.log("fetch blocks", blocks);
-
-        return blocks.map(rowToBlock);
-    },
-};
-
-onconnect = function (event) {
-    const port = event.ports[0];
-    Comlink.expose(SQLiteDB, port);
-};

deps/persist-db/webpack.config.js

@@ -1,13 +0,0 @@
-const path = require('path');
-
-module.exports = {
-  entry: './src/index.js',
-  target: ['webworker', 'es6'],
-  mode: 'production',
-  output: {
-    filename: 'persist-db-worker.js',
-    path: path.resolve(__dirname, 'dist'),
-    clean: true,
-  },
-  devtool: 'source-map',
-};

deps/persist-db/yarn.lock

@@ -1,804 +0,0 @@
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-
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-  resolved "https://registry.yarnpkg.com/fastest-levenshtein/-/fastest-levenshtein-1.0.16.tgz#210e61b6ff181de91ea9b3d1b84fdedd47e034e5"
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-  version "4.1.0"
-  resolved "https://registry.yarnpkg.com/find-up/-/find-up-4.1.0.tgz#97afe7d6cdc0bc5928584b7c8d7b16e8a9aa5d19"
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-  version "2.3.1"
-  resolved "https://registry.yarnpkg.com/json-parse-even-better-errors/-/json-parse-even-better-errors-2.3.1.tgz#7c47805a94319928e05777405dc12e1f7a4ee02d"
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-  version "4.3.0"
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-  version "5.0.0"
-  resolved "https://registry.yarnpkg.com/locate-path/-/locate-path-5.0.0.tgz#1afba396afd676a6d42504d0a67a3a7eb9f62aa0"
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[email protected]:
-  version "1.52.0"
-  resolved "https://registry.yarnpkg.com/mime-db/-/mime-db-1.52.0.tgz#bbabcdc02859f4987301c856e3387ce5ec43bf70"
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-  version "2.1.35"
-  resolved "https://registry.yarnpkg.com/mime-types/-/mime-types-2.1.35.tgz#381a871b62a734450660ae3deee44813f70d959a"
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-  dependencies:
-    mime-db "1.52.0"
-
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-  version "2.6.2"
-  resolved "https://registry.yarnpkg.com/neo-async/-/neo-async-2.6.2.tgz#b4aafb93e3aeb2d8174ca53cf163ab7d7308305f"
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-
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-  version "2.0.13"
-  resolved "https://registry.yarnpkg.com/node-releases/-/node-releases-2.0.13.tgz#d5ed1627c23e3461e819b02e57b75e4899b1c81d"
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-  version "2.3.0"
-  resolved "https://registry.yarnpkg.com/p-limit/-/p-limit-2.3.0.tgz#3dd33c647a214fdfffd835933eb086da0dc21db1"
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-  version "4.1.0"
-  resolved "https://registry.yarnpkg.com/p-locate/-/p-locate-4.1.0.tgz#a3428bb7088b3a60292f66919278b7c297ad4f07"
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-  version "2.2.0"
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-  version "4.0.0"
-  resolved "https://registry.yarnpkg.com/path-exists/-/path-exists-4.0.0.tgz#513bdbe2d3b95d7762e8c1137efa195c6c61b5b3"
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-  version "3.1.1"
-  resolved "https://registry.yarnpkg.com/path-key/-/path-key-3.1.1.tgz#581f6ade658cbba65a0d3380de7753295054f375"
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-  version "1.0.7"
-  resolved "https://registry.yarnpkg.com/path-parse/-/path-parse-1.0.7.tgz#fbc114b60ca42b30d9daf5858e4bd68bbedb6735"
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-  version "1.0.0"
-  resolved "https://registry.yarnpkg.com/picocolors/-/picocolors-1.0.0.tgz#cb5bdc74ff3f51892236eaf79d68bc44564ab81c"
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-  version "4.2.0"
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-  version "2.3.0"
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-  version "2.1.0"
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-  version "0.8.0"
-  resolved "https://registry.yarnpkg.com/rechoir/-/rechoir-0.8.0.tgz#49f866e0d32146142da3ad8f0eff352b3215ff22"
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-  version "3.0.0"
-  resolved "https://registry.yarnpkg.com/resolve-cwd/-/resolve-cwd-3.0.0.tgz#0f0075f1bb2544766cf73ba6a6e2adfebcb13f2d"
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-  version "5.0.0"
-  resolved "https://registry.yarnpkg.com/resolve-from/-/resolve-from-5.0.0.tgz#c35225843df8f776df21c57557bc087e9dfdfc69"
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-  resolved "https://registry.yarnpkg.com/resolve/-/resolve-1.22.2.tgz#0ed0943d4e301867955766c9f3e1ae6d01c6845f"
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-  version "6.0.1"
-  resolved "https://registry.yarnpkg.com/serialize-javascript/-/serialize-javascript-6.0.1.tgz#b206efb27c3da0b0ab6b52f48d170b7996458e5c"
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-    randombytes "^2.1.0"
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-shallow-clone@^3.0.0:
-  version "3.0.1"
-  resolved "https://registry.yarnpkg.com/shallow-clone/-/shallow-clone-3.0.1.tgz#8f2981ad92531f55035b01fb230769a40e02efa3"
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-  version "2.0.0"
-  resolved "https://registry.yarnpkg.com/shebang-command/-/shebang-command-2.0.0.tgz#ccd0af4f8835fbdc265b82461aaf0c36663f34ea"
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-  version "3.0.0"
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-  version "0.5.21"
-  resolved "https://registry.yarnpkg.com/source-map-support/-/source-map-support-0.5.21.tgz#04fe7c7f9e1ed2d662233c28cb2b35b9f63f6e4f"
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-  version "8.1.1"
-  resolved "https://registry.yarnpkg.com/supports-color/-/supports-color-8.1.1.tgz#cd6fc17e28500cff56c1b86c0a7fd4a54a73005c"
-  integrity sha512-MpUEN2OodtUzxvKQl72cUF7RQ5EiHsGvSsVG0ia9c5RbWGL2CI4C7EpPS8UTBIplnlzZiNuV56w+FuNxy3ty2Q==
-  dependencies:
-    has-flag "^4.0.0"
-
-supports-preserve-symlinks-flag@^1.0.0:
-  version "1.0.0"
-  resolved "https://registry.yarnpkg.com/supports-preserve-symlinks-flag/-/supports-preserve-symlinks-flag-1.0.0.tgz#6eda4bd344a3c94aea376d4cc31bc77311039e09"
-  integrity sha512-ot0WnXS9fgdkgIcePe6RHNk1WA8+muPa6cSjeR3V8K27q9BB1rTE3R1p7Hv0z1ZyAc8s6Vvv8DIyWf681MAt0w==
-
-tapable@^2.1.1, tapable@^2.2.0:
-  version "2.2.1"
-  resolved "https://registry.yarnpkg.com/tapable/-/tapable-2.2.1.tgz#1967a73ef4060a82f12ab96af86d52fdb76eeca0"
-  integrity sha512-GNzQvQTOIP6RyTfE2Qxb8ZVlNmw0n88vp1szwWRimP02mnTsx3Wtn5qRdqY9w2XduFNUgvOwhNnQsjwCp+kqaQ==
-
-terser-webpack-plugin@^5.3.7:
-  version "5.3.9"
-  resolved "https://registry.yarnpkg.com/terser-webpack-plugin/-/terser-webpack-plugin-5.3.9.tgz#832536999c51b46d468067f9e37662a3b96adfe1"
-  integrity sha512-ZuXsqE07EcggTWQjXUj+Aot/OMcD0bMKGgF63f7UxYcu5/AJF53aIpK1YoP5xR9l6s/Hy2b+t1AM0bLNPRuhwA==
-  dependencies:
-    "@jridgewell/trace-mapping" "^0.3.17"
-    jest-worker "^27.4.5"
-    schema-utils "^3.1.1"
-    serialize-javascript "^6.0.1"
-    terser "^5.16.8"
-
-terser@^5.16.8:
-  version "5.19.1"
-  resolved "https://registry.yarnpkg.com/terser/-/terser-5.19.1.tgz#dbd7231f224a9e2401d0f0959542ed74d76d340b"
-  integrity sha512-27hxBUVdV6GoNg1pKQ7Z5cbR6V9txPVyBA+FQw3BaZ1Wuzvztce5p156DaP0NVZNrMZZ+6iG9Syf7WgMNKDg2Q==
-  dependencies:
-    "@jridgewell/source-map" "^0.3.3"
-    acorn "^8.8.2"
-    commander "^2.20.0"
-    source-map-support "~0.5.20"
-
-update-browserslist-db@^1.0.11:
-  version "1.0.11"
-  resolved "https://registry.yarnpkg.com/update-browserslist-db/-/update-browserslist-db-1.0.11.tgz#9a2a641ad2907ae7b3616506f4b977851db5b940"
-  integrity sha512-dCwEFf0/oT85M1fHBg4F0jtLwJrutGoHSQXCh7u4o2t1drG+c0a9Flnqww6XUKSfQMPpJBRjU8d4RXB09qtvaA==
-  dependencies:
-    escalade "^3.1.1"
-    picocolors "^1.0.0"
-
-uri-js@^4.2.2:
-  version "4.4.1"
-  resolved "https://registry.yarnpkg.com/uri-js/-/uri-js-4.4.1.tgz#9b1a52595225859e55f669d928f88c6c57f2a77e"
-  integrity sha512-7rKUyy33Q1yc98pQ1DAmLtwX109F7TIfWlW1Ydo8Wl1ii1SeHieeh0HHfPeL2fMXK6z0s8ecKs9frCuLJvndBg==
-  dependencies:
-    punycode "^2.1.0"
-
-"wa-sqlite@link:../../../../../wa-sqlite":
-  version "0.0.0"
-  uid ""
-
-watchpack@^2.4.0:
-  version "2.4.0"
-  resolved "https://registry.yarnpkg.com/watchpack/-/watchpack-2.4.0.tgz#fa33032374962c78113f93c7f2fb4c54c9862a5d"
-  integrity sha512-Lcvm7MGST/4fup+ifyKi2hjyIAwcdI4HRgtvTpIUxBRhB+RFtUh8XtDOxUfctVCnhVi+QQj49i91OyvzkJl6cg==
-  dependencies:
-    glob-to-regexp "^0.4.1"
-    graceful-fs "^4.1.2"
-
-webpack-cli@^5.1.4:
-  version "5.1.4"
-  resolved "https://registry.yarnpkg.com/webpack-cli/-/webpack-cli-5.1.4.tgz#c8e046ba7eaae4911d7e71e2b25b776fcc35759b"
-  integrity sha512-pIDJHIEI9LR0yxHXQ+Qh95k2EvXpWzZ5l+d+jIo+RdSm9MiHfzazIxwwni/p7+x4eJZuvG1AJwgC4TNQ7NRgsg==
-  dependencies:
-    "@discoveryjs/json-ext" "^0.5.0"
-    "@webpack-cli/configtest" "^2.1.1"
-    "@webpack-cli/info" "^2.0.2"
-    "@webpack-cli/serve" "^2.0.5"
-    colorette "^2.0.14"
-    commander "^10.0.1"
-    cross-spawn "^7.0.3"
-    envinfo "^7.7.3"
-    fastest-levenshtein "^1.0.12"
-    import-local "^3.0.2"
-    interpret "^3.1.1"
-    rechoir "^0.8.0"
-    webpack-merge "^5.7.3"
-
-webpack-merge@^5.7.3:
-  version "5.9.0"
-  resolved "https://registry.yarnpkg.com/webpack-merge/-/webpack-merge-5.9.0.tgz#dc160a1c4cf512ceca515cc231669e9ddb133826"
-  integrity sha512-6NbRQw4+Sy50vYNTw7EyOn41OZItPiXB8GNv3INSoe3PSFaHJEz3SHTrYVaRm2LilNGnFUzh0FAwqPEmU/CwDg==
-  dependencies:
-    clone-deep "^4.0.1"
-    wildcard "^2.0.0"
-
-webpack-sources@^3.2.3:
-  version "3.2.3"
-  resolved "https://registry.yarnpkg.com/webpack-sources/-/webpack-sources-3.2.3.tgz#2d4daab8451fd4b240cc27055ff6a0c2ccea0cde"
-  integrity sha512-/DyMEOrDgLKKIG0fmvtz+4dUX/3Ghozwgm6iPp8KRhvn+eQf9+Q7GWxVNMk3+uCPWfdXYC4ExGBckIXdFEfH1w==
-
-webpack@^5.88.2:
-  version "5.88.2"
-  resolved "https://registry.yarnpkg.com/webpack/-/webpack-5.88.2.tgz#f62b4b842f1c6ff580f3fcb2ed4f0b579f4c210e"
-  integrity sha512-JmcgNZ1iKj+aiR0OvTYtWQqJwq37Pf683dY9bVORwVbUrDhLhdn/PlO2sHsFHPkj7sHNQF3JwaAkp49V+Sq1tQ==
-  dependencies:
-    "@types/eslint-scope" "^3.7.3"
-    "@types/estree" "^1.0.0"
-    "@webassemblyjs/ast" "^1.11.5"
-    "@webassemblyjs/wasm-edit" "^1.11.5"
-    "@webassemblyjs/wasm-parser" "^1.11.5"
-    acorn "^8.7.1"
-    acorn-import-assertions "^1.9.0"
-    browserslist "^4.14.5"
-    chrome-trace-event "^1.0.2"
-    enhanced-resolve "^5.15.0"
-    es-module-lexer "^1.2.1"
-    eslint-scope "5.1.1"
-    events "^3.2.0"
-    glob-to-regexp "^0.4.1"
-    graceful-fs "^4.2.9"
-    json-parse-even-better-errors "^2.3.1"
-    loader-runner "^4.2.0"
-    mime-types "^2.1.27"
-    neo-async "^2.6.2"
-    schema-utils "^3.2.0"
-    tapable "^2.1.1"
-    terser-webpack-plugin "^5.3.7"
-    watchpack "^2.4.0"
-    webpack-sources "^3.2.3"
-
-which@^2.0.1:
-  version "2.0.2"
-  resolved "https://registry.yarnpkg.com/which/-/which-2.0.2.tgz#7c6a8dd0a636a0327e10b59c9286eee93f3f51b1"
-  integrity sha512-BLI3Tl1TW3Pvl70l3yq3Y64i+awpwXqsGBYWkkqMtnbXgrMD+yj7rhW0kuEDxzJaYXGjEW5ogapKNMEKNMjibA==
-  dependencies:
-    isexe "^2.0.0"
-
-wildcard@^2.0.0:
-  version "2.0.1"
-  resolved "https://registry.yarnpkg.com/wildcard/-/wildcard-2.0.1.tgz#5ab10d02487198954836b6349f74fff961e10f67"
-  integrity sha512-CC1bOL87PIWSBhDcTrdeLo6eGT7mCFtrg0uIJtqJUFyK+eJnzl8A1niH56uu7KMa5XFrtiV+AQuHO3n7DsHnLQ==

gulpfile.js

@@ -64,7 +64,8 @@ const common = {
         'node_modules/marked/marked.min.js',
         'node_modules/@highlightjs/cdn-assets/highlight.min.js',
         'node_modules/@isomorphic-git/lightning-fs/dist/lightning-fs.min.js',
-        'packages/amplify/dist/amplify.js'
+        'packages/amplify/dist/amplify.js',
+        'node_modules/@logseq/sqlite/logseq_sqlite_bg.wasm',
       ]).pipe(gulp.dest(path.join(outputPath, 'js'))),
       () => gulp.src([
         'node_modules/pdfjs-dist/build/pdf.js',

package.json

@@ -28,7 +28,7 @@
         "postcss-import-ext-glob": "2.0.1",
         "postcss-nested": "6.0.0",
         "purgecss": "4.0.2",
-        "shadow-cljs": "2.17.5",
+        "shadow-cljs": "2.26.0",
         "stylelint": "^13.8.0",
         "stylelint-config-standard": "^20.0.0",
         "tailwindcss": "3.3.5",
@@ -101,6 +101,7 @@
         "@logseq/capacitor-file-sync": "5.0.1",
         "@logseq/diff-merge": "0.2.2",
         "@logseq/react-tweet-embed": "1.3.1-1",
+        "@logseq/sqlite": "=0.1.3",
         "@radix-ui/colors": "^0.1.8",
         "@sentry/react": "^6.18.2",
         "@sentry/tracing": "^6.18.2",

resources/index.html

@@ -52,6 +52,7 @@ const portal = new MagicPortal(worker);
 <script defer src="./js/marked.min.js"></script>
 <script defer src="./js/html2canvas.min.js"></script>
 <script defer src="./js/lsplugin.core.js"></script>
+<script defer src="./js/shared.js"></script>
 <script defer src="./js/main.js"></script>
 <script defer src="./js/amplify.js"></script>
 <script defer src="./js/tabler.min.js"></script>

resources/js/ls-wa-sqlite/persist-db-worker.js.LICENSE.txt

@@ -1,5 +0,0 @@
-/**
- * @license
- * Copyright 2019 Google LLC
- * SPDX-License-Identifier: Apache-2.0
- */

shadow-cljs.edn

@@ -11,8 +11,11 @@
  {:app {:target        :browser
         :module-loader true
         :js-options    {:ignore-asset-requires true} ;; handle `require(xxx.css)`
-        :modules       {:main
-                        {:init-fn    frontend.core/init}
+        :modules       {:shared
+                        {:entries []}
+                        :main
+                        {:init-fn    frontend.core/init
+                         :depends-on #{:shared}}
                         :code-editor
                         {:entries    [frontend.extensions.code]
                          :depends-on #{:main}}
@@ -21,8 +24,12 @@
                          :depends-on #{:main}}
                         :tldraw
                         {:entries    [frontend.extensions.tldraw]
-                         :depends-on #{:main}}}
-                        
+                         :depends-on #{:main}}
+                        :db-worker
+                        {:init-fn   frontend.db-worker/init
+                         :depends-on #{:shared}
+                         :web-worker true}}
+
         :output-dir       "./static/js"
         :asset-path       "/static/js"
         :release          {:asset-path "https://asset.logseq.com/static/js"}
@@ -97,7 +104,7 @@
                                :tldraw
                                {:entries    [frontend.extensions.tldraw]
                                 :depends-on #{:main}}}
-                               
+
                :output-dir       "./static/js/publishing"
                :asset-path       "static/js"
                :closure-defines  {frontend.config/PUBLISHING true
@@ -111,4 +118,4 @@
                :devtools         {:before-load frontend.core/stop
                                   :after-load  frontend.core/start
                                   :preloads    [devtools.preload]}}}}
-  
+

src/main/frontend/core.cljs

@@ -9,6 +9,7 @@
             [frontend.routes :as routes]
             [frontend.spec]
             [frontend.log]
+            [frontend.persist-db.browser :as browser-persist-db]
             [reitit.frontend :as rf]
             [reitit.frontend.easy :as rfe]
             [logseq.api]
@@ -67,5 +68,6 @@
   ;; this is controlled by :before-load in the config
   (handler/stop!)
   (when config/dev?
-    (sync/<sync-stop))
+    (sync/<sync-stop)
+    (browser-persist-db/dev-stop!))
   (js/console.log "stop"))

src/main/frontend/db_worker.cljs

@@ -0,0 +1,83 @@
+(ns frontend.db-worker
+  (:require ["@logseq/sqlite" :as sqlite-db :default wasm-bindgen-init]
+            ["comlink" :as Comlink]
+            [promesa.core :as p]
+            [shadow.cljs.modern :refer [defclass]]))
+
+(def *inited (atom false))
+
+(defclass SQLiteDB
+  (extends js/Object)
+
+  (constructor
+   [this]
+   (super))
+
+  Object
+  (inited
+   [_this]
+   (boolean @*inited))
+
+  ;; dev-only, close all db connections and db files
+  (unsafeDevCloseAll
+   [_this]
+   (.dev_close sqlite-db))
+
+  (getVersion
+   [_this]
+   (.get_version sqlite-db))
+
+  (supportOPFS
+   [_this]
+   (.has_opfs_support sqlite-db))
+
+  (listDB
+   [_this]
+   (.list_db sqlite-db))
+
+  (newDB
+   [_this repo]
+   (.new_db sqlite-db repo))
+
+  (deleteBlocks
+   [_this repo uuids]
+   (when (seq uuids)
+     (.delete_blocks sqlite-db repo uuids)))
+
+  (upsertBlocks
+   [_this repo blocks]
+   (.upsert_blocks sqlite-db repo blocks))
+
+  (fetchAllPages
+   [_this repo]
+   (.fetch_all_pages sqlite-db repo))
+
+  ;; fetch all blocks, return block id and page id
+  (fetchAllBlocks
+   [_this repo]
+   (.fetch_all_blocks sqlite-db repo))
+
+  (fetchRecentJournals
+   [_this repo]
+   (.fetch_recent_journals sqlite-db repo))
+
+  (fetchInitData
+   [_this repo]
+   (.fetch_init_data sqlite-db repo))
+
+  (fetchBlocksExcluding
+   [_this repo excluding-uuids]
+   (.fetch_blocks_excluding sqlite-db repo excluding-uuids)))
+
+(defn init
+  "web worker entry"
+  []
+  (p/let [current-url (js/URL. "/static/js/logseq_sqlite_bg.wasm" (.. js/location -href))
+          ^js obj (SQLiteDB.) ;; call this
+          _ (Comlink/expose obj) ;; expose as early as possible
+          _ (wasm-bindgen-init current-url) ;; init wasm
+          _ (.init sqlite-db)]
+    (prn ::init-ok
+         :has-opfs-support (.has_opfs_support sqlite-db)
+         :sqlite-version (.get_version sqlite-db))
+    (reset! *inited true)))

src/main/frontend/persist_db/browser.cljs

@@ -1,46 +1,62 @@
 (ns frontend.persist-db.browser
-  "Browser db persist"
+  "Browser db persist support, using @logseq/sqlite.
+
+   This interface uses clj data format as input."
   (:require ["comlink" :as Comlink]
             [cljs-time.coerce :as tc]
             [cljs-time.core :as t]
             [cljs.core.async.interop :refer [p->c]]
             [clojure.core.async :as async :refer [<! chan go go-loop]]
             [frontend.persist-db.protocol :as protocol]
-            [promesa.core :as p]))
+            [promesa.core :as p]
+            [frontend.util :as util]))
 
 (defonce *worker (atom nil))
 (defonce *sqlite (atom nil))
+(defonce *inited (atom false))
+
+
+(when-not (util/electron?)
+ (let [worker (try
+                (js/Worker. "/static/js/db-worker.js")
+                (catch js/Error e
+                  (js/console.error "worker error", e)
+                  nil))
+       ^js sqlite (Comlink/wrap worker)]
+   (reset! *worker worker)
+   (reset! *sqlite sqlite)))
 
-(defonce db-upsert-chan (chan 10))
-
-(defn- ensure-sqlite-init []
-  (if (nil? @*worker)
-    (js/Promise. (fn [resolve _reject]
-                   (let [worker (try
-                                  (js/SharedWorker. "/static/js/ls-wa-sqlite/persist-db-worker.js")
-                                  (catch js/Error e
-                                    (js/console.error "worker error", e)
-                                    nil))
-                         _ (reset! *worker worker)
-                         ^js sqlite (Comlink/wrap (.-port worker))
-                         _ (reset! *sqlite sqlite)]
-                     (-> (.init sqlite)
-                         (p/then (fn []
-                                   (js/console.log "sqlite init done")
-                                   (resolve @*sqlite)))
-                         (p/then (fn []
-                                   (go-loop []
-                                     (let [[repo ret-ch deleted-uuids upsert-blocks] (<! db-upsert-chan)
-                                           delete-rc (when (seq deleted-uuids)
-                                                       (<! (p->c (.deleteBlocks sqlite repo (clj->js (map str deleted-uuids))))))
-                                           upsert-rc (<! (p->c (.upsertBlocks sqlite repo (clj->js upsert-blocks))))]
-                                       (async/put! ret-ch [delete-rc upsert-rc])
-                                       (prn :db-upsert-chan :delete delete-rc :upsert upsert-rc))
-                                     (recur))
-                                   (prn ::done)))
-                         (p/catch (fn [e]
-                                    (js/console.error "init error", e)))))))
-    (p/resolved @*sqlite)))
+
+(defn- ensure-sqlite-init
+  []
+  (if @*inited
+    (p/resolved @*sqlite)
+    (js/Promise. (fn [resolve reject]
+                   (let [timer (atom nil)
+                         timer' (js/setInterval (fn []
+                                                  (p/let [inited (.inited ^js @*sqlite)]
+                                                    (when inited
+                                                      (p/let [version (.getVersion ^js @*sqlite)
+                                                              support (.supportOPFS ^js @*sqlite)]
+                                                        (prn :init-sqlite version :opfs-support support))
+                                                      (js/clearInterval @timer)
+                                                      (reset! *inited true)
+                                                      (resolve @*sqlite))))
+                                                1000)
+                         _ (reset! timer timer')]
+                     (js/setTimeout (fn []
+                                      (js/clearInterval timer)
+                                      (reject nil)) ;; cannot init
+                                    (js/console.error "SQLite worker is not ready after 100s")
+                                    100000))))))
+
+(defn dev-stop!
+  "For dev env only, stop opfs backend, close all sqlite connections and OPFS sync access handles."
+  []
+  (println "[persis-db] Dev: close all sqlite connections")
+  (when-not (util/electron?)
+    (when @*sqlite
+      (.unsafeDevCloseAll ^js @*sqlite))))
 
 (defn- type-of-block
   "
@@ -73,15 +89,15 @@
    @uuid, @type, @page_uuid, @page_journal_day, @name, @content, @datoms, @created_at, @updated_at
    "
   [b]
-  [(str (:block/uuid b))
-   (type-of-block b)
-   (str (:page_uuid b))
-   (:block/journal-day b)
-   (or (:file/path b) (:block/name b))
-   (or (:file/content b) (:block/content b))
-   (:datoms b)
-   (or (:block/created-at b) (time-ms))
-   (or (:block/updated-at b) (time-ms))])
+  {:uuid (str (:block/uuid b))
+   :type (type-of-block b)
+   :page_uuid (str (:page_uuid b))
+   :page_journal_day (:block/journal-day b)
+   :name (or (:file/path b) (:block/name b))
+   :content (or (:file/content b) (:block/content b))
+   :datoms (:datoms b)
+   :created_at (or (:block/created-at b) (time-ms))
+   :updated_at (or (:block/updated-at b) (time-ms))})
 
 (defrecord InBrowser []
   protocol/PersistentDB
@@ -91,27 +107,26 @@
       (.newDB sqlite repo)))
 
   (<list-db [_this]
-    (p/let [^js sqlite (ensure-sqlite-init)
-            dbs (.listDB sqlite)]
-      (js/console.log "list DBs:" dbs)
-      dbs))
+    (p/let [^js sqlite (ensure-sqlite-init)]
+      (.listDB sqlite)))
+
   (<unsafe-delete [_this repo]
     (p/let [^js sqlite (ensure-sqlite-init)]
       (.unsafeUnlinkDB sqlite repo)))
 
   (<transact-data [_this repo upsert-blocks deleted-uuids]
-    (go
-      (let [_ (<! (p->c (ensure-sqlite-init)))
-            upsert-blocks (map ds->sqlite-block upsert-blocks)
-            ch (chan)
-            _ (async/put! db-upsert-chan [repo ch deleted-uuids upsert-blocks])]
-        (<! ch))))
+    (p->c (p/let [^js sqlite (ensure-sqlite-init)
+                  deleted (clj->js (map str deleted-uuids))
+                  _ (when (seq deleted)
+                      (.deleteBlocks sqlite repo deleted))
+                  upsert-blocks (clj->js (map ds->sqlite-block upsert-blocks))]
+            (.upsertBlocks sqlite repo upsert-blocks))))
+
   (<fetch-initital-data [_this repo _opts]
-    (prn ::fetch-initial repo)
     (p/let [^js sqlite (ensure-sqlite-init)
             all-pages (.fetchAllPages sqlite repo)
             all-blocks (.fetchAllBlocks sqlite repo)
-            journal-blocks (.fetchRecentJournalBlocks sqlite repo)
+            journal-blocks (.fetchRecentJournals sqlite repo)
             init-data (.fetchInitData sqlite repo)]
 
       #js {:all-blocks all-blocks

src/main/frontend/persist_db/node.cljs

@@ -11,7 +11,7 @@
     (prn ::new repo)
     (ipc/ipc :db-new repo))
   (<list-db [_this]
-    (js/console.warn "TODO: list-db for electron not implemented")
+    (js/console.warn "TODO: list-db for electron is not implemented")
     [])
   (<unsafe-delete [_this _repo]
     (js/console.warn "TODO: delete")

yarn.lock

@@ -552,6 +552,11 @@
   resolved "https://registry.yarnpkg.com/@logseq/react-tweet-embed/-/react-tweet-embed-1.3.1-1.tgz#119d22be8234de006fc35c3fa2a36f85634c5be6"
   integrity sha512-9O0oHs5depCvh6ZQvwtl1xb7B80YG5rUfY10uSUat5itOlcE3IWaYYpe6p/tcHErqHWnWgkXHitAB9M29FMbQg==
 
+"@logseq/sqlite@=0.1.3":
+  version "0.1.3"
+  resolved "https://registry.yarnpkg.com/@logseq/sqlite/-/sqlite-0.1.3.tgz#b1213b680d3caf776652a5059abf9a0731d4cd7b"
+  integrity sha512-7NOFsDt1MqQvBB5p9bRLgCKLMlVJ2coeXEShQS+G7NsIKQ+lIzv7X4bu+69qTdAeeK2+jAVTZjbBX58r8TRgHQ==
+
 "@mapbox/node-pre-gyp@^1.0.0":
   version "1.0.11"
   resolved "https://registry.yarnpkg.com/@mapbox/node-pre-gyp/-/node-pre-gyp-1.0.11.tgz#417db42b7f5323d79e93b34a6d7a2a12c0df43fa"
@@ -6991,19 +6996,19 @@ sha.js@^2.4.0, sha.js@^2.4.8:
     inherits "^2.0.1"
     safe-buffer "^5.0.1"
 
[email protected].2:
-  version "1.3.2"
-  resolved "https://registry.yarnpkg.com/shadow-cljs-jar/-/shadow-cljs-jar-1.3.2.tgz#97273afe1747b6a2311917c1c88d9e243c81957b"
-  integrity sha512-XmeffAZHv8z7451kzeq9oKh8fh278Ak+UIOGGrapyqrFBB773xN8vMQ3O7J7TYLnb9BUwcqadKkmgaq7q6fhZg==
[email protected].4:
+  version "1.3.4"
+  resolved "https://registry.yarnpkg.com/shadow-cljs-jar/-/shadow-cljs-jar-1.3.4.tgz#0939d91c468b4bc5eab5a958f79e7ef5696fdf62"
+  integrity sha512-cZB2pzVXBnhpJ6PQdsjO+j/MksR28mv4QD/hP/2y1fsIa9Z9RutYgh3N34FZ8Ktl4puAXaIGlct+gMCJ5BmwmA==
 
-shadow-cljs@2.17.5:
-  version "2.17.5"
-  resolved "https://registry.yarnpkg.com/shadow-cljs/-/shadow-cljs-2.17.5.tgz#ed2fa8b06ea62cb310f069b70314e555f5bf9d50"
-  integrity sha512-Xvev4OLxGkjxC5mT5jHZDpJuAKzSHn7bGa4RPBm+Jp2gBz4iNkNDNPDvkyqt0r9RD0SWaYJF8zGyxi5c18yJBw==
+shadow-cljs@2.26.0:
+  version "2.26.0"
+  resolved "https://registry.yarnpkg.com/shadow-cljs/-/shadow-cljs-2.26.0.tgz#2a40d32f00da9bdd562ae634fe44ab2fbd0a073f"
+  integrity sha512-/GkAXhTMGG3rnoRORN5U+1nQfQD2AESb9+fnV8Cu2SxQ+wEoXhtoBnsa1GexFQ8+80Wz/s7rFf0PvTXkuM7lJQ==
   dependencies:
     node-libs-browser "^2.2.1"
     readline-sync "^1.4.7"
-    shadow-cljs-jar "1.3.2"
+    shadow-cljs-jar "1.3.4"
     source-map-support "^0.4.15"
     which "^1.3.1"
     ws "^7.4.6"